7th Central and Eastern European Proteomics Conference (CEEPC)

Date: October 13-16, 2013
Location: Abbe Center Beutenberg and Max Planck Institute for Chemical Ecology, Jena, Germany

Scientific Program


Sunday, October 13, 2013

15:00-18:00 Arrival and registration at Abbe Centre Beutenberg Hans-Knoell-Str.1, D-07745 Jena
18:00-19:00 Opening ceremony (Aleš Svatoš, Hana Kovářová)
19:00-22:00Mixer (Abbe Centre, outdoor/indoor)
20:00-22:00CEEPC Scientific committee meeting with invited speakers


Monday, October 14, 2013

Clinical proteomics and Interactomics


Proteomics changes its image: history, status and vision
Corinna Henkel, Medical Proteom-Center (MPC), Ruhr-University Bochum, Germany

09:40-10:10 Perturbed protein network analysis in human disease
H. Alexander Ebhardt, Institute of Molecular Systems Biology, ETH Zürich, Switzerland

Elucidation of a mislocalization-based pathomechanism
Jörg Reinders, University Regensburg, Germany

10:25-10:40Radiotherapy-related changes in serum proteome patterns of head and neck cancer patients; the evidence for effects of low radiation doses
Piotr Widlak, Maria Skłodowska Curie-Memorial Cancer Center and Institute of Oncology, Gliwice, Poland
10:40-11:10Coffee break
11:10-12:00How can chemical cross-linking/mass spectrometry contribute to protein 3D-structure analysis?
Andrea Sinz, Institute of Pharmacy, Martin Luther University Halle-Wittenberg, Germany
12:00-12:20Which biomarker would you like to discover today?
Karl Mechtler, Research Institute of Molecular Pathology, Vienna, Austria
12:20-13:00The COP9-Signalosome as a model to study the structure/function relationship of large protein complexes
Gili Ben-Nissan, Department of Biological Chemistry, Weizmann Institute of Science, Rehovot, Israel
13:00-14:30Lunch at the Abbe Centre Casino


Clinical proteomics and Interactomics (continued)

14:30-15:00 Epithelial-mesenchymal cross–talk: contractile and cytoskeletal protein involvement in transition towards myofibroblasts and cancer-associated fibroblasts in wound healing and tumorigenesis
Hana Kovářová, Institute of Animal Physiology and Genetics,Czech Academy of Sciences, Libechov, Czech Republic
15:00-15:20 Immobilized monolithic enzymatic reactors for online digestion of proteins secreted by developing human-embryos
Wei-Qiang Chen, Medical University of Vienna, Austria

Characterisation of the proteomic response of the human-pathogenic fungus Aspergillus fumigatus to low oxygen levels (hypoxia)
Olaf Kniemeyer, Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute, Jena, Germany

15:40-16:00Protein signaling in spinal parenchyma and dorsal root ganglion: key to future therapy approaches in spinal cord spasticity
Suresh Jivan Gadher, Life Technologies, Frederick, MD, USA
16:00-16:40Coffee break


New technology for high throughput clinical proteomics

16:40-17:30 Proteomic approaches in nutrition research
Sascha Sauer, Nutrigenomics and Gene Regulation, Max Planck Institute for Molecular Genetics, Berlin
17:30-17:50 Defensin level determination by targeted proteomic approach
Gergo Kalló, University of Debrecen, Hungary

An automated, high-throughput method for targeted quantification of intact insulin and its therapeutic analogues in human serum or plasma coupling mass spectrometric immunoassay with high resolution, accurate mass detection (MSIA-HRAM)
Michaela Scigelova, ThermoFisher Scientific, Germany

18:20-18:40Glycoprofiling of Human Plasma Proteins
László Drahos, Research Centre for Natural Sciences, Hungarian Academy of Sciences, Budapest, Hungary


Tuesday, October 15, 2013

Plant, insect and bacterial proteomics

09:00-09:50 Into the unknown: Systems biology approaches in exploring novel protein functions in plant signaling pathways
Waltraud Schulze, Plant Systems Biology, University of Hohenheim, Stuttgart, Germany
09:50-10:10 Molecular dissection of nuptial food gifts in a cricket
Yannick Pauchet
, Max Planck Institute for Chemical Ecology, Jena, Germany

Proteome and metabolome profiling of cytokinin action in Arabidopsis identifying both distinct and similar responses to cytokinin down- and up-regulation
Martin Černý, Mendel University Brno, Czech Republic


Identification of secretory proteins in defensive secretions from juvenile leaf beetles
Antje Burse
, Max Planck Institute for Chemical Ecology, Jena, Germany

10:50-11:10CYCAM − a main hub for the perception of beneficial microbe- and pathogen-associated molecular patterns leading to the cytosolic Ca2+ signaling, growth promotion and defense in Arabidopsis thaliana
Joy Michal Johnson, Friedrich Schiller University Jena, Germany
11:10-11:40Coffee break

Quantitative proteomics

11:40-12:10 Ion Mobility Enabled Data Independent Proteomics Approaches
Alexander Muck, Waters GmbH, Eschborn, Germany
12:10-12:30 Automated native sample preparation for biomarker search
Heidrun Rhode, University Hospital Jena, Germany

Quantitative N-Glycan Analysis using μLC-PGC-ESI-qTOF-MS
Claudia Michael, University of Vienna, Austria

12:50-13:10Phosvitin as a standard protein for optimization of enrichment of multiply phosphorylated proteins
Rudolf Kupcík, University of Pardubice, Czech Republic
13:10-14:30Lunch at the Abbe Centre Casino

Poster Session

14:30-15:00 Poster talks (1 min)
15:00-17:00 Poster Session at the Max Planck Institute for Chemical Ecology

Conference Dinner

18:30-22:00 Conference Dinner at Zeiss Planetarium / Café Bauersfeld, Am Planetarium 5, 07743 Jena


Wednesday, October 16, 2013

Spatially-resolved proteomics, imaging of biomarkers

09:00-09:40 Imaging mass spectrometry: Searching for the invisible, a new tool for disease investigations
Marc Baumann
, Meilahti Clinical Proteomics Core Facility, University of Helsinki, Finland

Accurate mass MALDI imaging at 25 μm pixel size for proteins after on-tissue digestion
Andreas Römpp, Institute for Inorganic and Analytical Chemistry, Justus Liebig University Giessen, Germany

10:10-10:30Identification of Biomarkers in MALDI imaging experiments
Sören Deininger, Bruker Daltonics, Bremen, Germany
10:30-10:503D MALDI imaging of larynx carcinoma
Ferdinand von Eggeling, University Hospital Jena, Germany

Coffee break

Concluding Lecture

11:30-12:20 Proteolipidomics by High Resolution Mass Spectrometry
Andrej Shevchenko, Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany
12:20Closing of 7th CEEPC

PDF of Abstract Book (updated version - date: October 14, 2013)